| ID | hsa_circ_0000021 | |||||
| Alias | hsa_circ_001027 | |||||
| Position | chr1:16044387-16047883 | |||||
| Strand | + | |||||
| Genomic length | 3496 | |||||
| Spliced sequence length | 435 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_015164 | |||||
| Gene symbol | PLEKHM2 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_RNase | 135 | 73 | 70 | 54 | Hs68_control | 1 | 1 | 69 | 51 |
| Memczak2013 | neutr | 3 | 1 | 7 | 1 | cd_19 | 1 | 1 | 15 | 2 |
| Rybak2015 | temporal_lobe | 24 | 15 | 40 | 8 | cerebellum | 25 | 17 | 89 | 21 | occipital_lobe | 35 | 24 | 81 | 5 | frontal_cortex | 79 | 44 | 76 | 19 | parietal_lobe | 11 | 10 | 67 | 20 | diencephalon | 31 | 28 | 83 | 15 |
| Salzman2013 | K562 | 19 | 15 | 62 | 43 | Nhlf | 63 | 3 | 78 | 59 | Gm12878 | 26 | 19 | 91 | 13 | Sknshra | 47 | 18 | 66 | 59 | H1hesc | 5 | 1 | 108 | 7 | Bj | 40 | 23 | 70 | 75 | Nhek | 18 | 4 | 126 | 52 | Huvec | 7 | 4 | 53 | 74 | Helas3 | 44 | 22 | 109 | 80 | Hepg2 | 20 | 12 | 92 | 84 | A549 | 10 | 5 | 26 | 32 | Ag04450 | 29 | 13 | 64 | 69 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||