| ID | hsa_circ_0001472 | |||||
| Alias | hsa_circ_001425 | |||||
| Position | chr5:36953719-36976504 | |||||
| Strand | + | |||||
| Genomic length | 22785 | |||||
| Spliced sequence length | 1574 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_015384 | |||||
| Gene symbol | NIPBL | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | adipose | 2 | 2 | 9 | 4 | vena_cava | 5 | 4 | 5 | 8 |
| Memczak2013 | cd_19 | 6 | 3 | 8 | 0 | |
| Rybak2015 | SY5Y_exp2_D0 | 5 | 4 | 21 | 29 | cerebellum | 63 | 52 | 47 | 48 | Sy5y_exp1_D0 | 8 | 7 | 25 | 18 | frontal_cortex | 128 | 57 | 57 | 61 | parietal_lobe | 77 | 55 | 50 | 77 | temporal_lobe | 116 | 52 | 21 | 69 | Sy5y_exp1_D2 | 4 | 2 | 13 | 18 | occipital_lobe | 124 | 61 | 62 | 58 | Sy5y_exp1_D4 | 8 | 7 | 17 | 18 | diencephalon | 81 | 56 | 51 | 59 |
| Salzman2013 | K562 | 12 | 11 | 78 | 67 | Nhek | 12 | 5 | 72 | 5 | Helas3 | 16 | 13 | 90 | 1 | Ag04450 | 1 | 1 | 61 | 8 | Gm12878 | 21 | 15 | 68 | 6 | Sknshra | 1 | 1 | 68 | 4 | H1hesc | 13 | 9 | 96 | 7 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||