ID | hsa_circ_0000061 | |||||
Alias | hsa_circ_002155 | |||||
Position | chr1:41536266-41541123 | |||||
Strand | - | |||||
Genomic length | 4857 | |||||
Spliced sequence length | 360 | |||||
Annotation |
| |||||
Repeats | None | |||||
Best transcript | NM_001172220 | |||||
Gene symbol | SCMH1 | |||||
Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
---|---|---|---|---|---|---|
Maass2017 | platelets | 5 | 4 | 0 | 0 | muscle | 3 | 3 | 0 | 0 | adipose | 6 | 5 | 5 | 8 | WAS2 | 7 | 6 | 3 | 5 | right_atrium | 3 | 3 | 5 | 5 | vena_cava | 5 | 5 | 3 | 2 | EPC | 2 | 2 | 4 | 3 |
Jeck2013 | Hs68_RNase | 555 | 171 | 34 | 28 | Hs68_control | 21 | 19 | 46 | 39 |
Memczak2013 | cd_34 | 29 | 8 | 6 | 0 | HEK293 | 1 | 1 | 8 | 3 | cd_19 | 32 | 11 | 4 | 4 |
Rybak2015 | SY5Y_exp2_D0 | 3 | 3 | 13 | 11 | cerebellum | 68 | 53 | 31 | 29 | Sy5y_exp1_D0 | 7 | 6 | 19 | 26 | frontal_cortex | 213 | 93 | 33 | 25 | parietal_lobe | 140 | 85 | 41 | 33 | temporal_lobe | 106 | 50 | 24 | 8 | Sy5y_exp1_D2 | 6 | 6 | 19 | 21 | SY5Y_exp2_D8 | 2 | 2 | 13 | 10 | occipital_lobe | 162 | 85 | 26 | 18 | SY5Y_exp2_D4 | 2 | 2 | 15 | 12 | Sy5y_exp1_D4 | 6 | 6 | 15 | 20 | diencephalon | 103 | 70 | 51 | 35 |
Salzman2013 | K562 | 47 | 37 | 28 | 27 | Mcf7 | 19 | 5 | 9 | 16 | Gm12878 | 123 | 76 | 22 | 37 | Sknshra | 56 | 28 | 38 | 34 | H1hesc | 27 | 16 | 20 | 29 | Bj | 112 | 47 | 40 | 30 | Nhek | 32 | 15 | 15 | 8 | Huvec | 10 | 7 | 33 | 23 | Helas3 | 86 | 51 | 49 | 26 | Hepg2 | 87 | 40 | 39 | 29 | A549 | 79 | 43 | 43 | 36 | Ag04450 | 105 | 64 | 58 | 38 |
Aligned reads | Memczak 2013 circRNA study (pooled samples) |