ID | hsa_circ_0000417 | |||||
Alias | hsa_circ_001472 | |||||
Position | chr12:69644908-69656342 | |||||
Strand | + | |||||
Genomic length | 11434 | |||||
Spliced sequence length | 1599 | |||||
Annotation |
| |||||
Repeats | None | |||||
Best transcript | NM_007007 | |||||
Gene symbol | CPSF6 | |||||
Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
---|---|---|---|---|---|---|
Maass2017 | platelets | 2 | 2 | 2 | 0 | cortex | 2 | 2 | 2 | 5 |
Memczak2013 | HEK293 | 3 | 3 | 15 | 7 | cd_19 | 4 | 4 | 64 | 7 |
Rybak2015 | SY5Y_exp2_D0 | 4 | 4 | 37 | 31 | cerebellum | 44 | 38 | 155 | 65 | Sy5y_exp1_D0 | 23 | 19 | 32 | 40 | frontal_cortex | 67 | 32 | 61 | 60 | parietal_lobe | 48 | 38 | 85 | 82 | temporal_lobe | 30 | 17 | 37 | 44 | Sy5y_exp1_D2 | 15 | 11 | 31 | 26 | SY5Y_exp2_D8 | 2 | 2 | 22 | 17 | occipital_lobe | 35 | 23 | 96 | 60 | SY5Y_exp2_D4 | 10 | 8 | 31 | 12 | Sy5y_exp1_D4 | 9 | 9 | 29 | 20 | diencephalon | 62 | 43 | 85 | 68 |
Salzman2013 | K562 | 96 | 49 | 97 | 160 | Mcf7 | 65 | 12 | 2 | 0 | Gm12878 | 9 | 4 | 32 | 17 | Sknshra | 69 | 19 | 63 | 23 | H1hesc | 34 | 18 | 38 | 21 | Huvec | 4 | 1 | 40 | 11 | Helas3 | 100 | 36 | 51 | 8 | Hepg2 | 122 | 34 | 43 | 10 | Ag04450 | 17 | 9 | 52 | 38 | A549 | 136 | 42 | 58 | 20 |
Aligned reads | Memczak 2013 circRNA study (pooled samples) |