| ID | hsa_circ_0000646 | |||||
| Alias | hsa_circ_001629 | |||||
| Position | chr15:83819966-83832827 | |||||
| Strand | - | |||||
| Genomic length | 12861 | |||||
| Spliced sequence length | 522 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_016073 | |||||
| Gene symbol | HDGFRP3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Jeck2013 | Hs68_RNase | 45 | 30 | 8 | 2 | Hs68_control | 4 | 4 | 72 | 96 |
| Memczak2013 | cd_19 | 9 | 2 | 1 | 13 | |
| Rybak2015 | SY5Y_exp2_D0 | 3 | 3 | 21 | 53 | cerebellum | 62 | 43 | 216 | 238 | Sy5y_exp1_D0 | 5 | 4 | 26 | 48 | frontal_cortex | 348 | 120 | 278 | 310 | parietal_lobe | 97 | 56 | 210 | 171 | temporal_lobe | 244 | 74 | 189 | 100 | Sy5y_exp1_D2 | 6 | 4 | 38 | 49 | SY5Y_exp2_D8 | 3 | 3 | 23 | 56 | occipital_lobe | 220 | 79 | 274 | 245 | SY5Y_exp2_D4 | 2 | 2 | 25 | 52 | Sy5y_exp1_D4 | 2 | 2 | 39 | 63 | diencephalon | 78 | 61 | 263 | 226 |
| Salzman2013 | K562 | Bj | 1 | 1 | 11 | 20 | Mcf7 | A549 | 2 | 1 | 22 | 52 | Ag04450 | Gm12878 | 1 | 1 | 15 | 21 | Hmec |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||