| ID | hsa_circ_0001006 | |||||
| Alias | hsa_circ_001289 | |||||
| Position | chr2:55209650-55214834 | |||||
| Strand | - | |||||
| Genomic length | 5184 | |||||
| Spliced sequence length | 347 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_020532 | |||||
| Gene symbol | RTN4 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | HUAEC | 3 | 3 | 18 | 41 | chondrocytes | 3 | 3 | 7 | 13 | fibroblasts | 2 | 2 | 3 | 6 | WAS2 | 3 | 3 | 10 | 4 | vena_cava | 4 | 4 | 11 | 12 | EPC | 7 | 6 | 10 | 22 | LCL | 2 | 2 | 3 | 6 | platelets | 26 | 17 | 4 | 10 | adipose | 2 | 2 | 32 | 26 | decidua | 3 | 3 | 2 | 9 | cortex | 2 | 2 | 50 | 26 | MSC_047 | 2 | 2 | 6 | 18 | MSC | 3 | 3 | 4 | 12 |
| Memczak2013 | HEK293 | 2 | 2 | 0 | 12 | cd_19 | 3 | 1 | 2 | 2 |
| Jeck2013 | Hs68_RNase | 2275 | 364 | 53 | 114 | Hs68_control | 88 | 46 | 149 | 264 |
| Rybak2015 | cerebellum | 243 | 146 | 325 | 269 | Sy5y_exp1_D0 | 7 | 6 | 25 | 30 | frontal_cortex | 1044 | 212 | 316 | 245 | parietal_lobe | 345 | 144 | 286 | 230 | temporal_lobe | 522 | 128 | 177 | 179 | Sy5y_exp1_D2 | 5 | 4 | 34 | 33 | occipital_lobe | 567 | 176 | 316 | 217 | Sy5y_exp1_D4 | 6 | 4 | 29 | 22 | diencephalon | 344 | 170 | 491 | 365 |
| Salzman2013 | K562 | 251 | 153 | 66 | 158 | Hsmm | Mcf7 | 20 | 10 | 34 | 33 | Gm12878 | 58 | 35 | 25 | 46 | Sknshra | 54 | 31 | 58 | 148 | H1hesc | 134 | 61 | 131 | 98 | Bj | 112 | 55 | 74 | 185 | Nhek | 101 | 33 | 130 | 201 | Huvec | 55 | 16 | 101 | 145 | Helas3 | 88 | 45 | 74 | 111 | Hepg2 | 135 | 44 | 59 | 87 | A549 | 180 | 73 | 58 | 131 | Ag04450 | 317 | 113 | 99 | 204 | Hmec | 31 | 1 | 7 | 38 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||