| ID | hsa_circ_0001346 | |||||
| Alias | hsa_circ_001891 | |||||
| Position | chr3:149563797-149639014 | |||||
| Strand | + | |||||
| Genomic length | 75217 | |||||
| Spliced sequence length | 716 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_183381 | |||||
| Gene symbol | RNF13 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | adipose | 4 | 3 | 11 | 5 | EPC | 3 | 3 | 2 | 0 |
| Memczak2013 | cd_34 | cd_19 | 12 | 5 | 33 | 0 |
| Jeck2013 | Hs68_RNase | 114 | 55 | 4 | 0 | Hs68_control | 19 | 17 | 58 | 51 |
| Rybak2015 | temporal_lobe | 68 | 38 | 30 | 18 | Sy5y_exp1_D2 | 4 | 4 | 11 | 12 | cerebellum | 98 | 65 | 55 | 52 | occipital_lobe | 91 | 52 | 73 | 56 | frontal_cortex | 161 | 71 | 60 | 65 | parietal_lobe | 61 | 39 | 62 | 31 | diencephalon | 146 | 85 | 55 | 65 |
| Salzman2013 | K562 | 11 | 8 | 21 | 25 | Mcf7 | 23 | 4 | 5 | 0 | Gm12878 | 74 | 42 | 25 | 17 | Sknshra | 20 | 13 | 100 | 10 | H1hesc | 51 | 25 | 39 | 11 | Bj | 15 | 10 | 101 | 8 | Nhek | 86 | 30 | 49 | 0 | Helas3 | 76 | 33 | 141 | 6 | Huvec | 7 | 4 | 52 | 0 | Hepg2 | 125 | 47 | 161 | 8 | A549 | 71 | 35 | 130 | 13 | Ag04450 | 8 | 5 | 79 | 16 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||