ID | hsa_circ_0001380 | |||||
Alias | hsa_circ_001645 | |||||
Position | chr3:196118683-196129890 | |||||
Strand | - | |||||
Genomic length | 11207 | |||||
Spliced sequence length | 247 | |||||
Annotation |
| |||||
Repeats | None | |||||
Best transcript | NM_015562 | |||||
Gene symbol | UBXN7 | |||||
Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
---|---|---|---|---|---|---|
Maass2017 | osteocytes | 6 | 4 | 0 | 0 | chondrocytes | 2 | 2 | 0 | 3 | WAS2 | 53 | 30 | 11 | 18 | LCL | 23 | 14 | 6 | 9 | decidua | 8 | 8 | 0 | 4 | umbilical_cord | 4 | 4 | 3 | 0 | cortex | 12 | 10 | 4 | 2 | right_atrium | 12 | 11 | 4 | 4 | HUAEC | 3 | 3 | 3 | 10 | fibroblasts | 3 | 2 | 0 | 2 | vena_cava | 32 | 19 | 0 | 3 | EPC | 5 | 5 | 4 | 6 | neutophils | 26 | 18 | 3 | 2 | VSMC | 3 | 3 | 3 | 0 | ada_scid | 19 | 11 | 9 | 13 | muscle | 11 | 8 | 2 | 0 | platelets | 182 | 37 | 2 | 3 | adipose | 15 | 10 | 4 | 2 | MSC | 4 | 4 | 0 | 0 | MSC_047 | 6 | 5 | 4 | 6 |
Memczak2013 | HEK293 | 2 | 2 | 4 | 7 | neutr | 1 | 1 | 1 | 1 | cd_19 | 6 | 2 | 25 | 7 |
Jeck2013 | Hs68_RNase | 1295 | 234 | 18 | 13 | Hs68_control | 48 | 32 | 36 | 35 |
Rybak2015 | SY5Y_exp2_D0 | 12 | 9 | 10 | 15 | cerebellum | 1376 | 366 | 45 | 89 | Sy5y_exp1_D0 | 39 | 23 | 12 | 23 | frontal_cortex | 5055 | 556 | 60 | 115 | parietal_lobe | 2011 | 311 | 52 | 82 | temporal_lobe | 2747 | 314 | 33 | 43 | Sy5y_exp1_D2 | 26 | 18 | 14 | 17 | SY5Y_exp2_D8 | 9 | 7 | 11 | 19 | occipital_lobe | 2750 | 408 | 47 | 121 | SY5Y_exp2_D4 | 10 | 10 | 12 | 11 | Sy5y_exp1_D4 | 23 | 18 | 17 | 20 | diencephalon | 1268 | 315 | 47 | 78 |
Salzman2013 | K562 | 266 | 149 | 112 | 76 | Mcf7 | 15 | 3 | 3 | 5 | Gm12878 | 144 | 77 | 45 | 21 | Sknshra | 72 | 43 | 19 | 33 | H1hesc | 88 | 40 | 65 | 66 | Bj | 38 | 21 | 11 | 13 | Nhek | 146 | 64 | 33 | 21 | Helas3 | 21 | 15 | 7 | 25 | Huvec | 25 | 11 | 5 | 14 | Hepg2 | 28 | 13 | 10 | 20 | A549 | 26 | 14 | 8 | 15 | Ag04450 | 86 | 53 | 24 | 50 |
Aligned reads | Memczak 2013 circRNA study (pooled samples) |