| ID | hsa_circ_0001439 | |||||
| Alias | hsa_circ_002036 | |||||
| Position | chr4:129913321-129925031 | |||||
| Strand | - | |||||
| Genomic length | 11710 | |||||
| Spliced sequence length | 396 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_144643 | |||||
| Gene symbol | SCLT1 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | chondrocytes | 3 | 3 | 0 | 0 | WAS2 | 20 | 12 | 2 | 2 | vena_cava | 8 | 7 | 0 | 0 | EPC | 2 | 2 | 0 | 0 | LCL | 5 | 4 | 0 | 4 | platelets | 84 | 44 | 0 | 11 | ada_scid | 2 | 2 | 0 | 0 | muscle | 5 | 5 | 0 | 0 | adipose | 3 | 3 | 0 | 0 | decidua | 2 | 2 | 0 | 0 | umbilical_cord | 2 | 2 | 0 | 0 | MSC_047 | 2 | 2 | 0 | 2 |
| Memczak2013 | neutr | 6 | 5 | 2 | 0 | cd_19 | 20 | 6 | 6 | 1 |
| Jeck2013 | Hs68_RNase | 533 | 132 | 6 | 11 | Hs68_control | 36 | 24 | 14 | 24 |
| Rybak2015 | SY5Y_exp2_D0 | 6 | 5 | 0 | 12 | cerebellum | 394 | 159 | 15 | 56 | Sy5y_exp1_D0 | 21 | 16 | 4 | 4 | frontal_cortex | 1164 | 273 | 7 | 69 | parietal_lobe | 314 | 146 | 10 | 42 | temporal_lobe | 598 | 162 | 4 | 32 | Sy5y_exp1_D2 | 16 | 15 | 5 | 6 | SY5Y_exp2_D8 | 3 | 3 | 2 | 6 | occipital_lobe | 898 | 268 | 11 | 61 | SY5Y_exp2_D4 | 7 | 7 | 0 | 5 | Sy5y_exp1_D4 | 11 | 9 | 3 | 7 | diencephalon | 438 | 226 | 11 | 59 |
| Salzman2013 | K562 | 36 | 34 | 19 | 29 | Gm12878 | 13 | 10 | 0 | 6 | Sknshra | 5 | 4 | 0 | 0 | H1hesc | 1 | 1 | 1 | 3 | Bj | 2 | 2 | 0 | 0 | Helas3 | 2 | 2 | 0 | 0 | Nhek | 8 | 6 | 0 | 4 | Hepg2 | Ag04450 | 15 | 10 | 0 | 10 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||