| ID | hsa_circ_0001578 | |||||
| Alias | hsa_circ_001173 | |||||
| Position | chr6:13639794-13644961 | |||||
| Strand | - | |||||
| Genomic length | 5167 | |||||
| Spliced sequence length | 598 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_005493 | |||||
| Gene symbol | RANBP9 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | platelets | 22 | 15 | 0 | 21 | vena_cava | 2 | 2 | 0 | 6 |
| Jeck2013 | Hs68_RNase | 27 | 23 | 2 | 38 | Hs68_control | 4 | 4 | 9 | 41 |
| Memczak2013 | neutr | 4 | 4 | 1 | 6 | |
| Rybak2015 | SY5Y_exp2_D0 | 2 | 2 | 2 | 17 | cerebellum | 51 | 41 | 12 | 137 | Sy5y_exp1_D0 | 4 | 4 | 6 | 29 | frontal_cortex | 258 | 105 | 32 | 216 | parietal_lobe | 98 | 70 | 13 | 156 | temporal_lobe | 193 | 72 | 13 | 127 | Sy5y_exp1_D2 | 2 | 2 | 3 | 31 | occipital_lobe | 206 | 102 | 15 | 193 | diencephalon | 53 | 42 | 16 | 157 |
| Salzman2013 | Hsmm | 4 | 2 | 7 | 1 | K562 | 51 | 44 | 69 | 205 | Gm12878 | 26 | 13 | 17 | 23 | Sknshra | 5 | 4 | 8 | 18 | H1hesc | 15 | 7 | 24 | 24 | Bj | 4 | 2 | 10 | 18 | Nhek | 10 | 4 | 13 | 22 | Huvec | 5 | 3 | 3 | 11 | Helas3 | 10 | 7 | 18 | 21 | Hepg2 | 2 | 1 | 10 | 9 | A549 | Ag04450 | 8 | 7 | 10 | 39 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||