| ID | hsa_circ_0001741 | |||||
| Alias | hsa_circ_002157 | |||||
| Position | chr7:128655032-128658211 | |||||
| Strand | - | |||||
| Genomic length | 3179 | |||||
| Spliced sequence length | 432 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_012470 | |||||
| Gene symbol | TNPO3 | |||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | HUAEC | 2 | 2 | 5 | 9 | LCL | 2 | 2 | 9 | 9 | platelets | 18 | 14 | 0 | 0 | adipose | 2 | 2 | 10 | 0 | WAS2 | 4 | 3 | 16 | 20 | vena_cava | 2 | 2 | 3 | 3 |
| Jeck2013 | Hs68_RNase | 355 | 126 | 7 | 11 | Hs68_control | 24 | 21 | 49 | 31 |
| Memczak2013 | cd_34 | 50 | 8 | 3 | 1 | neutr | 2 | 2 | 2 | 3 |
| Rybak2015 | SY5Y_exp2_D0 | 5 | 4 | 29 | 19 | cerebellum | 360 | 181 | 145 | 92 | Sy5y_exp1_D0 | 25 | 20 | 25 | 38 | frontal_cortex | 1582 | 289 | 164 | 147 | parietal_lobe | 467 | 177 | 157 | 87 | temporal_lobe | 566 | 147 | 140 | 65 | Sy5y_exp1_D2 | 34 | 24 | 32 | 33 | SY5Y_exp2_D8 | 3 | 3 | 22 | 13 | occipital_lobe | 971 | 233 | 164 | 115 | SY5Y_exp2_D4 | 3 | 3 | 28 | 23 | Sy5y_exp1_D4 | 17 | 14 | 27 | 29 | diencephalon | 404 | 169 | 168 | 141 |
| Salzman2013 | Hsmm | 14 | 2 | 24 | 0 | K562 | 337 | 178 | 216 | 189 | Mcf7 | 58 | 11 | 68 | 1 | Gm12878 | 207 | 84 | 137 | 36 | Sknshra | 79 | 40 | 146 | 18 | H1hesc | 238 | 86 | 229 | 60 | Bj | 42 | 27 | 91 | 8 | Nhek | 62 | 23 | 124 | 20 | Huvec | 33 | 6 | 72 | 7 | Helas3 | 161 | 49 | 167 | 4 | Hepg2 | 162 | 45 | 144 | 9 | A549 | 62 | 38 | 127 | 10 | Ag04450 | 87 | 47 | 98 | 23 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||