| ID | hsa_circ_0001900 | |||||
| Alias | hsa_circ_000004 | |||||
| Position | chr9:138773478-138774924 | |||||
| Strand | - | |||||
| Genomic length | 1446 | |||||
| Spliced sequence length | 425 | |||||
| Annotation |
| |||||
| Repeats | None | |||||
| Best transcript | NM_015447 | |||||
| Gene symbol | CAMSAP1 | |||||
| Experimental exidence | ||||||
| Scores | circRNA study | Sample | total reads circular junction |
unique reads circular junction |
unique reads linear-5' junctions |
unique reads linear-3' junctions |
|---|---|---|---|---|---|---|
| Maass2017 | HUAEC | 5 | 5 | 2 | 6 | WAS2 | 15 | 10 | 0 | 5 | vena_cava | 5 | 4 | 0 | 0 | EPC | 7 | 6 | 0 | 5 | LCL | 3 | 3 | 2 | 2 | VSMC | 3 | 3 | 0 | 2 | muscle | 3 | 3 | 0 | 0 | adipose | 3 | 3 | 0 | 0 | decidua | 2 | 2 | 0 | 3 | umbilical_cord | 3 | 3 | 0 | 0 | MSC_047 | 3 | 3 | 0 | 4 | right_atrium | 2 | 2 | 0 | 3 |
| Jeck2013 | Hs68_RNase | 2511 | 420 | 32 | 72 | Hs68_control | 73 | 46 | 14 | 31 |
| Memczak2013 | cd_34 | 19 | 4 | 0 | 0 | HEK293 | 3 | 3 | 0 | 3 | cd_19 | 19 | 4 | 0 | 0 |
| Rybak2015 | SY5Y_exp2_D0 | 13 | 11 | 11 | 19 | cerebellum | 476 | 218 | 155 | 155 | Sy5y_exp1_D0 | 46 | 32 | 13 | 28 | frontal_cortex | 1937 | 296 | 197 | 194 | parietal_lobe | 612 | 208 | 201 | 152 | temporal_lobe | 626 | 152 | 109 | 112 | Sy5y_exp1_D2 | 20 | 19 | 8 | 28 | SY5Y_exp2_D8 | 3 | 3 | 7 | 15 | occipital_lobe | 1079 | 264 | 181 | 166 | SY5Y_exp2_D4 | 6 | 4 | 7 | 22 | Sy5y_exp1_D4 | 12 | 9 | 7 | 25 | diencephalon | 593 | 221 | 181 | 152 |
| Salzman2013 | Hsmm | 166 | 28 | 26 | 3 | K562 | 1012 | 375 | 25 | 76 | Mcf7 | 2057 | 265 | 99 | 16 | Nhlf | 159 | 21 | 4 | 0 | Gm12878 | 1276 | 341 | 30 | 19 | Sknshra | 440 | 121 | 22 | 29 | H1hesc | 1639 | 349 | 96 | 25 | Bj | 393 | 110 | 6 | 6 | Nhek | 524 | 130 | 41 | 5 | Huvec | 366 | 76 | 14 | 10 | Helas3 | 1856 | 263 | 30 | 12 | Hepg2 | 1732 | 317 | 29 | 10 | A549 | 746 | 169 | 20 | 19 | Ag04450 | 896 | 175 | 20 | 34 | Hmec | 137 | 8 | 0 | 2 |
| Aligned reads | Memczak 2013 circRNA study (pooled samples) | |||||